# This is a shell archive.  Save it in a file, remove anything before
# this line, and then unpack it by entering "sh file".  Note, it may
# create directories; files and directories will be owned by you and
# have default permissions.
#
# This archive contains:
#
#	plinkseq
#	plinkseq/pkg-descr
#	plinkseq/Makefile
#	plinkseq/pkg-plist
#	plinkseq/distinfo
#
echo c - plinkseq
mkdir -p plinkseq > /dev/null 2>&1
echo x - plinkseq/pkg-descr
sed 's/^X//' >plinkseq/pkg-descr << 'bacf232f9cecbb3e3b9b866dd40bb1cf'
XPLINK/SEQ is an open-source C/C++ library for working with human genetic
Xvariation data. The specific focus is to provide a platform for analytic tool
Xdevelopment for variation data from large-scale resequencing and genotyping
Xprojects, particularly whole-exome and whole-genome studies. It is independent
Xof (but designed to be complementary to) the existing PLINK package.
X
XWWW:	http://atgu.mgh.harvard.edu/plinkseq/
bacf232f9cecbb3e3b9b866dd40bb1cf
echo x - plinkseq/Makefile
sed 's/^X//' >plinkseq/Makefile << '01f8db9920f39f93248e063672899cd8'
X# New ports collection makefile for:	plinkseq
X# Date created:		06 September 2012
X# Whom:			Jason Bacon <jwbacon@tds.net>
X#
X# $FreeBSD$
X#
X
XPORTNAME=	plinkseq
XPORTVERSION=	0.08
XCATEGORIES=	biology science
XMASTER_SITES=	http://atgu.mgh.harvard.edu/${PORTNAME}/dist/version-${PORTVERSION}/
X
XMAINTAINER=	jwbacon@tds.net
XCOMMENT=	A toolset for working with human genetic variation data
X
XLICENSE=	GPLv2
X
XLIB_DEPENDS=	protobuf:${PORTSDIR}/devel/protobuf
X
XUSE_DOS2UNIX=	yes
XUSE_LDCONFIG=	yes
XGNU_CONFIGURE=	yes
XCONFIGURE_ARGS+=--with-protobuf=${LOCALBASE}
X
Xpost-patch:
X	${REINPLACE_CMD} -e 's|PF_INET|AF_INET|g' ${WRKSRC}/browser/mongoose.c
X	${REINPLACE_CMD} -e 's|-ldl||g' \
X		${WRKSRC}/browser/Makefile.in \
X		${WRKSRC}/client/Makefile.in \
X		${WRKSRC}/index/Makefile.in
X
X.include <bsd.port.mk>
01f8db9920f39f93248e063672899cd8
echo x - plinkseq/pkg-plist
sed 's/^X//' >plinkseq/pkg-plist << '34f02599c75e4950ca1bd20735d356cb'
Xbin/behead
Xbin/gcol
Xbin/index
Xbin/index.cgi
Xbin/mongoose
Xbin/pbrowse
Xbin/pbrowse.cgi
Xbin/pseq
Xbin/tab2vcf
Xlib/libplinkseq.la
Xlib/libplinkseq.so
Xlib/libplinkseq.so.0
34f02599c75e4950ca1bd20735d356cb
echo x - plinkseq/distinfo
sed 's/^X//' >plinkseq/distinfo << '85239e4941d225b70ec996841d9daa0e'
XSHA256 (plinkseq-0.08.tar.gz) = 6bde88925a82a79c6fa2401a197865cf6d659163fd5f11c5fb426701b54bb24f
XSIZE (plinkseq-0.08.tar.gz) = 2991871
85239e4941d225b70ec996841d9daa0e
exit