# This is a shell archive. Save it in a file, remove anything before # this line, and then unpack it by entering "sh file". Note, it may # create directories; files and directories will be owned by you and # have default permissions. # # This archive contains: # # plinkseq # plinkseq/pkg-descr # plinkseq/Makefile # plinkseq/pkg-plist # plinkseq/distinfo # echo c - plinkseq mkdir -p plinkseq > /dev/null 2>&1 echo x - plinkseq/pkg-descr sed 's/^X//' >plinkseq/pkg-descr << 'bacf232f9cecbb3e3b9b866dd40bb1cf' XPLINK/SEQ is an open-source C/C++ library for working with human genetic Xvariation data. The specific focus is to provide a platform for analytic tool Xdevelopment for variation data from large-scale resequencing and genotyping Xprojects, particularly whole-exome and whole-genome studies. It is independent Xof (but designed to be complementary to) the existing PLINK package. X XWWW: http://atgu.mgh.harvard.edu/plinkseq/ bacf232f9cecbb3e3b9b866dd40bb1cf echo x - plinkseq/Makefile sed 's/^X//' >plinkseq/Makefile << '01f8db9920f39f93248e063672899cd8' X# New ports collection makefile for: plinkseq X# Date created: 06 September 2012 X# Whom: Jason Bacon X# X# $FreeBSD$ X# X XPORTNAME= plinkseq XPORTVERSION= 0.08 XCATEGORIES= biology science XMASTER_SITES= http://atgu.mgh.harvard.edu/${PORTNAME}/dist/version-${PORTVERSION}/ X XMAINTAINER= jwbacon@tds.net XCOMMENT= A toolset for working with human genetic variation data X XLICENSE= GPLv2 X XLIB_DEPENDS= protobuf:${PORTSDIR}/devel/protobuf X XUSE_DOS2UNIX= yes XUSE_LDCONFIG= yes XGNU_CONFIGURE= yes XCONFIGURE_ARGS+=--with-protobuf=${LOCALBASE} X Xpost-patch: X ${REINPLACE_CMD} -e 's|PF_INET|AF_INET|g' ${WRKSRC}/browser/mongoose.c X ${REINPLACE_CMD} -e 's|-ldl||g' \ X ${WRKSRC}/browser/Makefile.in \ X ${WRKSRC}/client/Makefile.in \ X ${WRKSRC}/index/Makefile.in X X.include 01f8db9920f39f93248e063672899cd8 echo x - plinkseq/pkg-plist sed 's/^X//' >plinkseq/pkg-plist << '34f02599c75e4950ca1bd20735d356cb' Xbin/behead Xbin/gcol Xbin/index Xbin/index.cgi Xbin/mongoose Xbin/pbrowse Xbin/pbrowse.cgi Xbin/pseq Xbin/tab2vcf Xlib/libplinkseq.la Xlib/libplinkseq.so Xlib/libplinkseq.so.0 34f02599c75e4950ca1bd20735d356cb echo x - plinkseq/distinfo sed 's/^X//' >plinkseq/distinfo << '85239e4941d225b70ec996841d9daa0e' XSHA256 (plinkseq-0.08.tar.gz) = 6bde88925a82a79c6fa2401a197865cf6d659163fd5f11c5fb426701b54bb24f XSIZE (plinkseq-0.08.tar.gz) = 2991871 85239e4941d225b70ec996841d9daa0e exit